SNP Detail For rs4959027
1.Mapping Information
Human SNP ID rs4959027
Human chromosome chr6
Human SNP position 32415273
Pig chromosome chr7
Pig SNP position 29025851
2.Annotation Information
PubMed ID23449627
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23449627
StudyGenome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.
Disease/TraitPubertal anthropometrics
Initial sampleup to 5,043 European ancestry males, up to 5,756 European ancestry females
Replication sampleNA
Region6p21.32
Chromosome idchr6
Chromosome position32415273
Reported geneTAP2, HLA-DRA
Mapped geneBTNL2 - HLA-DRA
Upstream gene id56244
Downstream gene id3122
SNP gene ids
Upstream gene distance6394
Downstream gene distance24569
SNP risk allelers4959027-G
SNPsrs4959027
Merged0
SNP id current4959027
Contextintergenic_variant
Intergenic1
Allele frequency0.82
P value0.0000009
Pvalue mlog6.04575749056067
P value text(Pubertal growth)
Or beta0.09
%95 Ci[0.057-0.123] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitpuberty, height growth measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001382, http://www.ebi.ac.uk/efo/EFO_0005201
Study accessionGCST001876