Human SNP ID | rs4959027 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32415273 |
Pig chromosome | chr7 |
Pig SNP position | 29025851 |
PubMed ID | 23449627 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23449627 |
Study | Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity. |
Disease/Trait | Pubertal anthropometrics |
Initial sample | up to 5,043 European ancestry males, up to 5,756 European ancestry females |
Replication sample | NA |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32415273 |
Reported gene | TAP2, HLA-DRA |
Mapped gene | BTNL2 - HLA-DRA |
Upstream gene id | 56244 |
Downstream gene id | 3122 |
SNP gene ids | |
Upstream gene distance | 6394 |
Downstream gene distance | 24569 |
SNP risk allele | rs4959027-G |
SNPs | rs4959027 |
Merged | 0 |
SNP id current | 4959027 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.82 |
P value | 0.0000009 |
Pvalue mlog | 6.04575749056067 |
P value text | (Pubertal growth) |
Or beta | 0.09 |
%95 Ci | [0.057-0.123] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | puberty, height growth measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001382, http://www.ebi.ac.uk/efo/EFO_0005201 |
Study accession | GCST001876 |