Human SNP ID | rs4953911 |
---|---|
Human chromosome | chr2 |
Human SNP position | 134311223 |
Pig chromosome | chr15 |
Pig SNP position | 20185358 |
PubMed ID | 20117844 |
---|---|
Journal | J Neuroimmunol |
Link | www.ncbi.nlm.nih.gov/pubmed/20117844 |
Study | MGAT5 alters the severity of multiple sclerosis. |
Disease/Trait | Multiple sclerosis (severity) |
Initial sample | 1,040 European ancestry cases |
Replication sample | 873 European ancestry cases |
Region | 2q21.3 |
Chromosome id | chr2 |
Chromosome position | 134311223 |
Reported gene | MGAT5 |
Mapped gene | MGAT5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4249 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4953911-T |
SNPs | rs4953911 |
Merged | 0 |
SNP id current | 4953911 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.36 |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix [105035] |
CNV | N |
Mapped trait | multiple sclerosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003885 |
Study accession | GCST000577 |