SNP Detail For rs4953911
1.Mapping Information
Human SNP ID rs4953911
Human chromosome chr2
Human SNP position 134311223
Pig chromosome chr15
Pig SNP position 20185358
2.Annotation Information
PubMed ID20117844
JournalJ Neuroimmunol
Linkwww.ncbi.nlm.nih.gov/pubmed/20117844
StudyMGAT5 alters the severity of multiple sclerosis.
Disease/TraitMultiple sclerosis (severity)
Initial sample1,040 European ancestry cases
Replication sample873 European ancestry cases
Region2q21.3
Chromosome idchr2
Chromosome position134311223
Reported geneMGAT5
Mapped geneMGAT5
Upstream gene id
Downstream gene id
SNP gene ids4249
Upstream gene distance
Downstream gene distance
SNP risk allelers4953911-T
SNPsrs4953911
Merged0
SNP id current4953911
Contextintron_variant
Intergenic0
Allele frequency0.36
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta
%95 Ci
PlatformAffymetrix [105035]
CNVN
Mapped traitmultiple sclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003885
Study accessionGCST000577