Human SNP ID | rs495366 |
---|---|
Human chromosome | chr11 |
Human SNP position | 102824377 |
Pig chromosome | chr9 |
Pig SNP position | 37384061 |
PubMed ID | 20031604 |
---|---|
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20031604 |
Study | Genome-wide association scan identifies variants near Matrix Metalloproteinase (MMP) genes on chromosome 11q21-22 strongly associated with serum MMP-1 levels. |
Disease/Trait | Matrix metalloproteinase levels |
Initial sample | 778 Old Order Amish individuals |
Replication sample | NA |
Region | 11q22.2 |
Chromosome id | chr11 |
Chromosome position | 102824377 |
Reported gene | MMP |
Mapped gene | WTAPP1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100288077 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs495366-A |
SNPs | rs495366 |
Merged | 0 |
SNP id current | 495366 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.36 |
P value | 6E-34 |
Pvalue mlog | 33.2218487496163 |
P value text | |
Or beta | 0.44 |
%95 Ci | [NR] unit decrease |
Platform | Affymetrix [338079] |
CNV | N |
Mapped trait | matrix metalloproteinase measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004744 |
Study accession | GCST000450 |