Human SNP ID | rs4952590 |
---|---|
Human chromosome | chr2 |
Human SNP position | 42049781 |
Pig chromosome | chr3 |
Pig SNP position | 104407597 |
PubMed ID | 19961619 |
---|---|
Journal | BMC Med Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19961619 |
Study | A pooling-based genome-wide analysis identifies new potential candidate genes for atopy in the European Community Respiratory Health Survey (ECRHS). |
Disease/Trait | Atopy |
Initial sample | 75 European ancestry atopy and asthma cases, 75 European ancestry atopy only cases, 75 European ancestry controls |
Replication sample | 429 European ancestry atopy cases, 222 European ancestry controls |
Region | 2p21 |
Chromosome id | chr2 |
Chromosome position | 42049781 |
Reported gene | SGK493 |
Mapped gene | PKDCC |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 91461 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4952590-? |
SNPs | rs4952590 |
Merged | 0 |
SNP id current | 4952590 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.86 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.92 |
%95 Ci | [1.27-2.86] |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | atopy |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002686 |
Study accession | GCST000540 |