SNP Detail For rs4952590
1.Mapping Information
Human SNP ID rs4952590
Human chromosome chr2
Human SNP position 42049781
Pig chromosome chr3
Pig SNP position 104407597
2.Annotation Information
PubMed ID19961619
JournalBMC Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19961619
StudyA pooling-based genome-wide analysis identifies new potential candidate genes for atopy in the European Community Respiratory Health Survey (ECRHS).
Disease/TraitAtopy
Initial sample75 European ancestry atopy and asthma cases, 75 European ancestry atopy only cases, 75 European ancestry controls
Replication sample429 European ancestry atopy cases, 222 European ancestry controls
Region2p21
Chromosome idchr2
Chromosome position42049781
Reported geneSGK493
Mapped genePKDCC
Upstream gene id
Downstream gene id
SNP gene ids91461
Upstream gene distance
Downstream gene distance
SNP risk allelers4952590-?
SNPsrs4952590
Merged0
SNP id current4952590
Contextintron_variant
Intergenic0
Allele frequency0.86
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.92
%95 Ci[1.27-2.86]
PlatformIllumina [NR]
CNVN
Mapped traitatopy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002686
Study accessionGCST000540