Human SNP ID | rs4947962 |
---|---|
Human chromosome | chr7 |
Human SNP position | 55008114 |
Pig chromosome | chr9 |
Pig SNP position | 153644698 |
PubMed ID | 26503763 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/26503763 |
Study | Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder. |
Disease/Trait | Subjective response to lithium treatment |
Initial sample | 1,639 European ancestry bipolar disorder responder cases, 8,899 European ancestry controls |
Replication sample | NA |
Region | 7p11.2 |
Chromosome id | chr7 |
Chromosome position | 55008114 |
Reported gene | EGFR |
Mapped gene | LOC105375284 - EGFR |
Upstream gene id | 105375284 |
Downstream gene id | 1956 |
SNP gene ids | |
Upstream gene distance | 12495 |
Downstream gene distance | 10918 |
SNP risk allele | rs4947962-G |
SNPs | rs4947962 |
Merged | 0 |
SNP id current | 4947962 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.11 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 1.35 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [> 8000000] (imputed) |
CNV | N |
Mapped trait | bipolar disorder, response to lithium ion |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000289, http://purl.obolibrary.org/obo/GO_0010226 |
Study accession | GCST003158 |