SNP Detail For rs4947339
1.Mapping Information
Human SNP ID rs4947339
Human chromosome chr6
Human SNP position 28948475
Pig chromosome chr7
Pig SNP position 24467797
2.Annotation Information
PubMed ID20526338
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20526338
StudyGenome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.
Disease/TraitPlatelet aggregation
Initial sampleUp to 3,991 European ancestry individuals
Replication sampleUp to 840 African American individuals
Region6p22.1
Chromosome idchr6
Chromosome position28948475
Reported geneTRIM27
Mapped geneTRM-CAT3-1 - TRK-TTT3-5
Upstream gene id100189216
Downstream gene id100189234
SNP gene ids
Upstream gene distance3828
Downstream gene distance2554
SNP risk allelers4947339-T
SNPsrs4947339
Merged0
SNP id current4947339
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.438
P value0.000002
Pvalue mlog5.69897000433601
P value text(epinehprine)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 2330000] (imputed)
CNVN
Mapped traitplatelet aggregation
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0070527
Study accessionGCST000693