SNP Detail For rs4946717
1.Mapping Information
Human SNP ID rs4946717
Human chromosome chr6
Human SNP position 106026874
Pig chromosome chr1
Pig SNP position 81521565
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region6q21
Chromosome idchr6
Chromosome position106026874
Reported geneNR
Mapped geneLOC105377923 - PRDM1
Upstream gene id105377923
Downstream gene id639
SNP gene ids
Upstream gene distance133812
Downstream gene distance59446
SNP risk allelers4946717-?
SNPsrs4946717
Merged
SNP id current4946717
Contextregulatory_region_variant
Intergenic1
Allele frequencyNR
P value4E-22
Pvalue mlog21.397940008672
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043