SNP Detail For rs494620
1.Mapping Information
Human SNP ID rs494620
Human chromosome chr6
Human SNP position 31870936
Pig chromosome chr7
Pig SNP position 27841568
2.Annotation Information
PubMed ID19448619
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19448619
StudyLoci at chromosomes 13, 19 and 20 influence age at natural menopause.
Disease/TraitMenopause (age at onset)
Initial sample2,979 European ancestry female individuals
Replication sample2,560 European ancestry female individuals
Region6p21.33
Chromosome idchr6
Chromosome position31870936
Reported geneNR
Mapped geneSLC44A4
Upstream gene id
Downstream gene id
SNP gene ids80736
Upstream gene distance
Downstream gene distance
SNP risk allelers494620-?
SNPsrs494620
Merged0
SNP id current494620
Contextsynonymous_variant
Intergenic0
Allele frequencyNR
P value0.0000005
Pvalue mlog6.30102999566398
P value text
Or beta0.3
%95 Ci[0.18-0.42] years increase
PlatformIllumina [315418]
CNVN
Mapped traitage at menopause
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004704
Study accessionGCST000401