Human SNP ID | rs494620 |
---|---|
Human chromosome | chr6 |
Human SNP position | 31870936 |
Pig chromosome | chr7 |
Pig SNP position | 27841568 |
PubMed ID | 19448619 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19448619 |
Study | Loci at chromosomes 13, 19 and 20 influence age at natural menopause. |
Disease/Trait | Menopause (age at onset) |
Initial sample | 2,979 European ancestry female individuals |
Replication sample | 2,560 European ancestry female individuals |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31870936 |
Reported gene | NR |
Mapped gene | SLC44A4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 80736 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs494620-? |
SNPs | rs494620 |
Merged | 0 |
SNP id current | 494620 |
Context | synonymous_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000005 |
Pvalue mlog | 6.30102999566398 |
P value text | |
Or beta | 0.3 |
%95 Ci | [0.18-0.42] years increase |
Platform | Illumina [315418] |
CNV | N |
Mapped trait | age at menopause |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004704 |
Study accession | GCST000401 |