SNP Detail For rs494558
1.Mapping Information
Human SNP ID rs494558
Human chromosome chr13
Human SNP position 110276815
Pig chromosome chr11
Pig SNP position 84486278
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region13q34
Chromosome idchr13
Chromosome position110276815
Reported geneCOL4A1
Mapped geneCOL4A1
Upstream gene id
Downstream gene id
SNP gene ids1282
Upstream gene distance
Downstream gene distance
SNP risk allelers494558-G
SNPsrs494558
Merged0
SNP id current494558
Contextintron_variant
Intergenic0
Allele frequency0.078
P value0.00000005
Pvalue mlog7.30102999566398
P value text(Weight z-score change )
Or beta0.05
%95 Ci[NR] SD/y increase
PlatformIllumina [899892]
CNVN
Mapped traitbody weight
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004338
Study accessionGCST001762