Human SNP ID | rs4938573 |
---|---|
Human chromosome | chr11 |
Human SNP position | 118871133 |
Pig chromosome | chr9 |
Pig SNP position | 51161191 |
PubMed ID | 25279986 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25279986 |
Study | Genome-wide Association Study Identifies Five Susceptibility Loci for Follicular Lymphoma outside the HLA Region. |
Disease/Trait | Follicular lymphoma |
Initial sample | 2,728 European ancestry cases, 7,758 European ancestry controls |
Replication sample | 1,795 European ancestry cases, 5,586 European ancestry controls |
Region | 11q23.3 |
Chromosome id | chr11 |
Chromosome position | 118871133 |
Reported gene | CXCR5 |
Mapped gene | DDX6 - CXCR5 |
Upstream gene id | 1656 |
Downstream gene id | 643 |
SNP gene ids | |
Upstream gene distance | 79870 |
Downstream gene distance | 12633 |
SNP risk allele | rs4938573-C |
SNPs | rs4938573 |
Merged | 0 |
SNP id current | 4938573 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.204 |
P value | 6E-20 |
Pvalue mlog | 19.2218487496163 |
P value text | |
Or beta | 1.34 |
%95 Ci | [1.26-1.43] |
Platform | Illumina [up to 21554489] |
CNV | N |
Mapped trait | neoplasm of mature B-cells |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000096 |
Study accession | GCST002643 |