SNP Detail For rs4938573
1.Mapping Information
Human SNP ID rs4938573
Human chromosome chr11
Human SNP position 118871133
Pig chromosome chr9
Pig SNP position 51161191
2.Annotation Information
PubMed ID25279986
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25279986
StudyGenome-wide Association Study Identifies Five Susceptibility Loci for Follicular Lymphoma outside the HLA Region.
Disease/TraitFollicular lymphoma
Initial sample2,728 European ancestry cases, 7,758 European ancestry controls
Replication sample1,795 European ancestry cases, 5,586 European ancestry controls
Region11q23.3
Chromosome idchr11
Chromosome position118871133
Reported geneCXCR5
Mapped geneDDX6 - CXCR5
Upstream gene id1656
Downstream gene id643
SNP gene ids
Upstream gene distance79870
Downstream gene distance12633
SNP risk allelers4938573-C
SNPsrs4938573
Merged0
SNP id current4938573
Contextregulatory_region_variant
Intergenic1
Allele frequency0.204
P value6E-20
Pvalue mlog19.2218487496163
P value text
Or beta1.34
%95 Ci[1.26-1.43]
PlatformIllumina [up to 21554489]
CNVN
Mapped traitneoplasm of mature B-cells
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000096
Study accessionGCST002643