Human SNP ID | rs493573 |
---|---|
Human chromosome | chr11 |
Human SNP position | 64789582 |
Pig chromosome | chr2 |
Pig SNP position | 6511077 |
PubMed ID | 21768215 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21768215 |
Study | Genome-wide association study for serum urate concentrations and gout among African Americans identifies genomic risk loci and a novel URAT1 loss-of-function allele. |
Disease/Trait | Urate levels |
Initial sample | 8,651 African American individuals |
Replication sample | 1,996 African American individuals |
Region | 11q13.1 |
Chromosome id | chr11 |
Chromosome position | 64789582 |
Reported gene | MAP4K2 |
Mapped gene | MAP4K2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5871 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs493573-A |
SNPs | rs493573 |
Merged | 0 |
SNP id current | 493573 |
Context | synonymous_variant |
Intergenic | 0 |
Allele frequency | 0.03 |
P value | 0.00000000000000002 |
Pvalue mlog | 16.698970004336 |
P value text | (AA) |
Or beta | 0.8 |
%95 Ci | [NR] mg/dl decrease |
Platform | Affymetrix [NR] (imputed) |
CNV | N |
Mapped trait | urate measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004531 |
Study accession | GCST001163 |