SNP Detail For rs4925189
1.Mapping Information
Human SNP ID rs4925189
Human chromosome chr20
Human SNP position 61371988
Pig chromosome chr17
Pig SNP position 68560906
2.Annotation Information
PubMed ID20932310
JournalBMC Neurol
Linkwww.ncbi.nlm.nih.gov/pubmed/20932310
StudyGenome-wide association reveals genetic effects on human Aβ42 and τ protein levels in cerebrospinal fluids: a case control study.
Disease/TraitCerebrospinal T-tau levels
Initial sample172 European ancestry Alzheimer__s disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls
Replication sampleNA
Region20q13.33
Chromosome idchr20
Chromosome position61371988
Reported geneCDH4
Mapped geneCDH4
Upstream gene id
Downstream gene id
SNP gene ids1002
Upstream gene distance
Downstream gene distance
SNP risk allelers4925189-G
SNPsrs4925189
Merged0
SNP id current4925189
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000006
Pvalue mlog6.22184874961635
P value text(AD)
Or beta
%95 Ci
PlatformIllumina [498205]
CNVN
Mapped traitt-tau measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004760
Study accessionGCST000826