SNP Detail For rs4916483
1.Mapping Information
Human SNP ID rs4916483
Human chromosome chr3
Human SNP position 196180782
Pig chromosome chr13
Pig SNP position 143338201
2.Annotation Information
PubMed ID20139978
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20139978
StudyGenome-wide association study of hematological and biochemical traits in a Japanese population.
Disease/TraitMean corpuscular hemoglobin
Initial sampleUp to 14,362 Japanese ancestry individuals
Replication sampleNA
Region3q29
Chromosome idchr3
Chromosome position196180782
Reported geneTFRC, ZDHHC19
Mapped geneLINC00885 - LOC105374303
Upstream gene id401109
Downstream gene id105374303
SNP gene ids
Upstream gene distance19892
Downstream gene distance12003
SNP risk allelers4916483-C
SNPsrs4916483
Merged0
SNP id current4916483
Contextregulatory_region_variant
Intergenic1
Allele frequency0.44
P value0.00000000004
Pvalue mlog10.397940008672
P value text
Or beta0.078
%95 Ci[0.054-0.102] unit decrease
PlatformIllumina [561583]
CNVN
Mapped traithemoglobin measurement, mean corpuscular hemoglobin
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004509, http://www.ebi.ac.uk/efo/EFO_0004527
Study accessionGCST000587
PubMed ID20139978
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20139978
StudyGenome-wide association study of hematological and biochemical traits in a Japanese population.
Disease/TraitMean corpuscular volume
Initial sample14,364 Japanese ancestry individuals
Replication sampleNA
Region3q29
Chromosome idchr3
Chromosome position196180782
Reported geneTFRC, ZDHHC19
Mapped geneLINC00885 - LOC105374303
Upstream gene id401109
Downstream gene id105374303
SNP gene ids
Upstream gene distance19892
Downstream gene distance12003
SNP risk allelers4916483-C
SNPsrs4916483
Merged0
SNP id current4916483
Contextregulatory_region_variant
Intergenic1
Allele frequency0.44
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta0.067
%95 Ci[0.043-0.091] unit decrease
PlatformIllumina [561583]
CNVN
Mapped traitmean corpuscular volume
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004526
Study accessionGCST000585