Human SNP ID | rs4916483 |
---|---|
Human chromosome | chr3 |
Human SNP position | 196180782 |
Pig chromosome | chr13 |
Pig SNP position | 143338201 |
PubMed ID | 20139978 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20139978 |
Study | Genome-wide association study of hematological and biochemical traits in a Japanese population. |
Disease/Trait | Mean corpuscular hemoglobin |
Initial sample | Up to 14,362 Japanese ancestry individuals |
Replication sample | NA |
Region | 3q29 |
Chromosome id | chr3 |
Chromosome position | 196180782 |
Reported gene | TFRC, ZDHHC19 |
Mapped gene | LINC00885 - LOC105374303 |
Upstream gene id | 401109 |
Downstream gene id | 105374303 |
SNP gene ids | |
Upstream gene distance | 19892 |
Downstream gene distance | 12003 |
SNP risk allele | rs4916483-C |
SNPs | rs4916483 |
Merged | 0 |
SNP id current | 4916483 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.44 |
P value | 0.00000000004 |
Pvalue mlog | 10.397940008672 |
P value text | |
Or beta | 0.078 |
%95 Ci | [0.054-0.102] unit decrease |
Platform | Illumina [561583] |
CNV | N |
Mapped trait | hemoglobin measurement, mean corpuscular hemoglobin |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004509, http://www.ebi.ac.uk/efo/EFO_0004527 |
Study accession | GCST000587 |
PubMed ID | 20139978 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20139978 |
Study | Genome-wide association study of hematological and biochemical traits in a Japanese population. |
Disease/Trait | Mean corpuscular volume |
Initial sample | 14,364 Japanese ancestry individuals |
Replication sample | NA |
Region | 3q29 |
Chromosome id | chr3 |
Chromosome position | 196180782 |
Reported gene | TFRC, ZDHHC19 |
Mapped gene | LINC00885 - LOC105374303 |
Upstream gene id | 401109 |
Downstream gene id | 105374303 |
SNP gene ids | |
Upstream gene distance | 19892 |
Downstream gene distance | 12003 |
SNP risk allele | rs4916483-C |
SNPs | rs4916483 |
Merged | 0 |
SNP id current | 4916483 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.44 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 0.067 |
%95 Ci | [0.043-0.091] unit decrease |
Platform | Illumina [561583] |
CNV | N |
Mapped trait | mean corpuscular volume |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004526 |
Study accession | GCST000585 |