SNP Detail For rs4905994
1.Mapping Information
Human SNP ID rs4905994
Human chromosome chr14
Human SNP position 100687735
Pig chromosome chr7
Pig SNP position 132257357
2.Annotation Information
PubMed ID25886283
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25886283
StudyGenome-wide association study of serum minerals levels in children of different ethnic background.
Disease/TraitMagnesium levels
Initial sample2,317 European ancestry children, 1,283 African-American ancestry children
Replication sampleNA
Region14q32.2
Chromosome idchr14
Chromosome position100687735
Reported geneNR
Mapped geneLOC105370668
Upstream gene id
Downstream gene id
SNP gene ids105370668
Upstream gene distance
Downstream gene distance
SNP risk allelers4905994-T
SNPsrs4905994
Merged0
SNP id current4905994
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta0.0234
%95 Ci[NR] mg/dl decrease
PlatformIllumina [up to 509150]
CNVN
Mapped traitmagnesium measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004845
Study accessionGCST002860
PubMed ID25886283
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25886283
StudyGenome-wide association study of serum minerals levels in children of different ethnic background.
Disease/TraitMagnesium levels
Initial sample2,317 European ancestry children, 1,283 African-American ancestry children
Replication sampleNA
Region14q32.2
Chromosome idchr14
Chromosome position100687735
Reported geneNR
Mapped geneLOC105370668
Upstream gene id
Downstream gene id
SNP gene ids105370668
Upstream gene distance
Downstream gene distance
SNP risk allelers4905994-T
SNPsrs4905994
Merged0
SNP id current4905994
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.000007
Pvalue mlog5.15490195998574
P value text(EA)
Or beta0.02871
%95 Ci(-0.04119--0.01623) mg/dl decrease
PlatformIllumina [up to 509150]
CNVN
Mapped traitmagnesium measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004845
Study accessionGCST002860