SNP Detail For rs4902642
1.Mapping Information
Human SNP ID rs4902642
Human chromosome chr14
Human SNP position 68743482
Pig chromosome chr7
Pig SNP position 98754743
2.Annotation Information
PubMed ID21102463
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21102463
StudyGenome-wide meta-analysis increases to 71 the number of confirmed Crohn__s disease susceptibility loci.
Disease/TraitCrohn__s disease
Initial sample6,333 European ancestry cases, 15,056 European ancestry controls
Replication sample15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios
Region14q24.1
Chromosome idchr14
Chromosome position68743482
Reported geneZFP36L1
Mapped geneRPL12P7 - ZFP36L1
Upstream gene id326275
Downstream gene id677
SNP gene ids
Upstream gene distance49856
Downstream gene distance44173
SNP risk allelers4902642-G
SNPsrs4902642
Merged0
SNP id current4902642
Contextintergenic_variant
Intergenic1
Allele frequency0.584
P value0.0000000002
Pvalue mlog9.69897000433601
P value text
Or beta1.07
%95 Ci[1.11-1.04]
PlatformAffymetrix, Illumina [953241] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST000879