SNP Detail For rs4902243
1.Mapping Information
Human SNP ID rs4902243
Human chromosome chr14
Human SNP position 63767525
Pig chromosome chr1
Pig SNP position 216241570
2.Annotation Information
PubMed ID24816252
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24816252
StudyAn atlas of genetic influences on human blood metabolites.
Disease/TraitBlood metabolite levels
Initial sample7,824 European ancestry individuals
Replication sampleNA
Region14q23.2
Chromosome idchr14
Chromosome position63767525
Reported geneSGPP1
Mapped geneSGPP1 - SYNE2
Upstream gene id81537
Downstream gene id23224
SNP gene ids
Upstream gene distance39430
Downstream gene distance85061
SNP risk allelers4902243-A
SNPsrs4902243
Merged0
SNP id current4902243
Contextintergenic_variant
Intergenic1
Allele frequency0.86
P value3E-37
Pvalue mlog36.5228787452803
P value text(X-10510)
Or beta0.044
%95 Ci[0.036-0.052] unit decrease
PlatformAffymetrix, Illumina [2100000] (imputed)
CNVN
Mapped traitblood metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005664
Study accessionGCST002443