SNP Detail For rs4902141
1.Mapping Information
Human SNP ID rs4902141
Human chromosome chr14
Human SNP position 62501677
Pig chromosome chr1
Pig SNP position 217463060
2.Annotation Information
PubMed ID23518928
JournalMol Endocrinol
Linkwww.ncbi.nlm.nih.gov/pubmed/23518928
StudyTSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.
Disease/TraitEstradiol plasma levels (breast cancer)
Initial sample700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases
Replication sampleNA
Region14q23.2
Chromosome idchr14
Chromosome position62501677
Reported geneNR
Mapped geneLOC105370529
Upstream gene id
Downstream gene id
SNP gene ids105370529
Upstream gene distance
Downstream gene distance
SNP risk allelers4902141-?
SNPsrs4902141
Merged0
SNP id current4902141
Contextintergenic_variant
Intergenic0
Allele frequency0.026
P value0.0000001
Pvalue mlog7
P value text
Or beta2.161
%95 Ci[1.629-2.867] unit increase
PlatformIllumina [563945]
CNVN
Mapped traitestradiol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004697
Study accessionGCST001914