SNP Detail For rs4900384
1.Mapping Information
Human SNP ID rs4900384
Human chromosome chr14
Human SNP position 98032614
Pig chromosome chr7
Pig SNP position 126430922
2.Annotation Information
PubMed ID19430480
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19430480
StudyGenome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.
Disease/TraitType 1 diabetes
Initial sample7,514 cases, 9,045 controls
Replication sample4,267 cases, 4,670 controls, 4,342 trios from 2,319 families
Region14q32.2
Chromosome idchr14
Chromosome position98032614
Reported geneintergenic
Mapped geneLINC01550 - LOC105370655
Upstream gene id388011
Downstream gene id105370655
SNP gene ids
Upstream gene distance54490
Downstream gene distance46986
SNP risk allelers4900384-G
SNPsrs4900384
Merged0
SNP id current4900384
Contextintergenic_variant
Intergenic1
Allele frequency0.29
P value0.000000004
Pvalue mlog8.39794000867203
P value text
Or beta1.09
%95 Ci[1.02-1.16]
PlatformAffymetrix, Illumina [841622] (imputed)
CNVN
Mapped traittype I diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001359
Study accessionGCST000392