Human SNP ID | rs4900384 |
---|---|
Human chromosome | chr14 |
Human SNP position | 98032614 |
Pig chromosome | chr7 |
Pig SNP position | 126430922 |
PubMed ID | 19430480 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19430480 |
Study | Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes. |
Disease/Trait | Type 1 diabetes |
Initial sample | 7,514 cases, 9,045 controls |
Replication sample | 4,267 cases, 4,670 controls, 4,342 trios from 2,319 families |
Region | 14q32.2 |
Chromosome id | chr14 |
Chromosome position | 98032614 |
Reported gene | intergenic |
Mapped gene | LINC01550 - LOC105370655 |
Upstream gene id | 388011 |
Downstream gene id | 105370655 |
SNP gene ids | |
Upstream gene distance | 54490 |
Downstream gene distance | 46986 |
SNP risk allele | rs4900384-G |
SNPs | rs4900384 |
Merged | 0 |
SNP id current | 4900384 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.29 |
P value | 0.000000004 |
Pvalue mlog | 8.39794000867203 |
P value text | |
Or beta | 1.09 |
%95 Ci | [1.02-1.16] |
Platform | Affymetrix, Illumina [841622] (imputed) |
CNV | N |
Mapped trait | type I diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001359 |
Study accession | GCST000392 |