Human SNP ID | rs4900109 |
---|---|
Human chromosome | chr14 |
Human SNP position | 92297047 |
Pig chromosome | chr7 |
Pig SNP position | 120412719 |
PubMed ID | 21835309 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21835309 |
Study | GWAS findings for human iris patterns: associations with variants in genes that influence normal neuronal pattern development. |
Disease/Trait | Iris characteristics |
Initial sample | 2,121 European ancestry individuals |
Replication sample | 499 European ancestry adolescent twins and siblings, 73 European ancestry adult individuals |
Region | 14q32.12 |
Chromosome id | chr14 |
Chromosome position | 92297047 |
Reported gene | SLC324A4 |
Mapped gene | CPSF2 - LOC105370627 |
Upstream gene id | 53981 |
Downstream gene id | 105370627 |
SNP gene ids | |
Upstream gene distance | 132848 |
Downstream gene distance | 7367 |
SNP risk allele | rs4900109-G |
SNPs | rs4900109 |
Merged | 0 |
SNP id current | 4900109 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | |
P value | 8E-21 |
Pvalue mlog | 20.096910013008 |
P value text | (Pigmented Ring) |
Or beta | 0.17 |
%95 Ci | [0.13-0.21] unit increase |
Platform | Illumina [274604] (imputed) |
CNV | N |
Mapped trait | eye measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004731 |
Study accession | GCST001199 |