SNP Detail For rs4900109
1.Mapping Information
Human SNP ID rs4900109
Human chromosome chr14
Human SNP position 92297047
Pig chromosome chr7
Pig SNP position 120412719
2.Annotation Information
PubMed ID21835309
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21835309
StudyGWAS findings for human iris patterns: associations with variants in genes that influence normal neuronal pattern development.
Disease/TraitIris characteristics
Initial sample2,121 European ancestry individuals
Replication sample499 European ancestry adolescent twins and siblings, 73 European ancestry adult individuals
Region14q32.12
Chromosome idchr14
Chromosome position92297047
Reported geneSLC324A4
Mapped geneCPSF2 - LOC105370627
Upstream gene id53981
Downstream gene id105370627
SNP gene ids
Upstream gene distance132848
Downstream gene distance7367
SNP risk allelers4900109-G
SNPsrs4900109
Merged0
SNP id current4900109
Contextintergenic_variant
Intergenic1
Allele frequency
P value8E-21
Pvalue mlog20.096910013008
P value text(Pigmented Ring)
Or beta0.17
%95 Ci[0.13-0.21] unit increase
PlatformIllumina [274604] (imputed)
CNVN
Mapped traiteye measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004731
Study accessionGCST001199