SNP Detail For rs4894410
1.Mapping Information
Human SNP ID rs4894410
Human chromosome chr3
Human SNP position 139324394
Pig chromosome chr13
Pig SNP position 87852541
2.Annotation Information
PubMed ID22446961
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22446961
StudyTwo new susceptibility loci for Kawasaki disease identified through genome-wide association analysis.
Disease/TraitKawasaki disease
Initial sample622 Han Chinese ancestry cases, 1,107 Han Chinese ancestry controls
Replication sample261 Han Chinese ancestry cases, 550 Han Chinese ancestry controls
Region3q23
Chromosome idchr3
Chromosome position139324394
Reported geneCOPB2
Mapped genePISRT1 - MRPS22
Upstream gene id140464
Downstream gene id56945
SNP gene ids
Upstream gene distance90872
Downstream gene distance19600
SNP risk allelers4894410-G
SNPsrs4894410
Merged0
SNP id current4894410
Contextintron_variant
Intergenic1
Allele frequency0.021
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta2.094
%95 Ci[1.498-2.925]
PlatformAffymetrix [716935]
CNVN
Mapped traitmucocutaneous lymph node syndrome
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004246
Study accessionGCST001456