Human SNP ID | rs4894410 |
---|---|
Human chromosome | chr3 |
Human SNP position | 139324394 |
Pig chromosome | chr13 |
Pig SNP position | 87852541 |
PubMed ID | 22446961 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22446961 |
Study | Two new susceptibility loci for Kawasaki disease identified through genome-wide association analysis. |
Disease/Trait | Kawasaki disease |
Initial sample | 622 Han Chinese ancestry cases, 1,107 Han Chinese ancestry controls |
Replication sample | 261 Han Chinese ancestry cases, 550 Han Chinese ancestry controls |
Region | 3q23 |
Chromosome id | chr3 |
Chromosome position | 139324394 |
Reported gene | COPB2 |
Mapped gene | PISRT1 - MRPS22 |
Upstream gene id | 140464 |
Downstream gene id | 56945 |
SNP gene ids | |
Upstream gene distance | 90872 |
Downstream gene distance | 19600 |
SNP risk allele | rs4894410-G |
SNPs | rs4894410 |
Merged | 0 |
SNP id current | 4894410 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.021 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | 2.094 |
%95 Ci | [1.498-2.925] |
Platform | Affymetrix [716935] |
CNV | N |
Mapped trait | mucocutaneous lymph node syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004246 |
Study accession | GCST001456 |