Human SNP ID | rs4886707 |
---|---|
Human chromosome | chr15 |
Human SNP position | 75463126 |
Pig chromosome | chr7 |
Pig SNP position | 62856122 |
PubMed ID | 20189936 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20189936 |
Study | A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci. |
Disease/Trait | Height |
Initial sample | 19,633 Japanese ancestry individuals |
Replication sample | NA |
Region | 15q24.2 |
Chromosome id | chr15 |
Chromosome position | 75463126 |
Reported gene | SIN3A, PTPN9 |
Mapped gene | SIN3A - PTPN9 |
Upstream gene id | 25942 |
Downstream gene id | 5780 |
SNP gene ids | |
Upstream gene distance | 7311 |
Downstream gene distance | 3995 |
SNP risk allele | rs4886707-T |
SNPs | rs4886707 |
Merged | 0 |
SNP id current | 4886707 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.42 |
P value | 0.00000008 |
Pvalue mlog | 7.09691001300805 |
P value text | |
Or beta | 0.06 |
%95 Ci | [0.04-0.08] cm increase |
Platform | Illumina [420885] |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST000611 |