SNP Detail For rs4886707
1.Mapping Information
Human SNP ID rs4886707
Human chromosome chr15
Human SNP position 75463126
Pig chromosome chr7
Pig SNP position 62856122
2.Annotation Information
PubMed ID20189936
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20189936
StudyA genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.
Disease/TraitHeight
Initial sample19,633 Japanese ancestry individuals
Replication sampleNA
Region15q24.2
Chromosome idchr15
Chromosome position75463126
Reported geneSIN3A, PTPN9
Mapped geneSIN3A - PTPN9
Upstream gene id25942
Downstream gene id5780
SNP gene ids
Upstream gene distance7311
Downstream gene distance3995
SNP risk allelers4886707-T
SNPsrs4886707
Merged0
SNP id current4886707
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.42
P value0.00000008
Pvalue mlog7.09691001300805
P value text
Or beta0.06
%95 Ci[0.04-0.08] cm increase
PlatformIllumina [420885]
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000611