Human SNP ID | rs4886088 |
---|---|
Human chromosome | chr13 |
Human SNP position | 58554392 |
Pig chromosome | chr11 |
Pig SNP position | 32971915 |
PubMed ID | 22589738 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22589738 |
Study | Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. |
Disease/Trait | Subcutaneous adipose tissue |
Initial sample | 5,560 European ancestry female individuals, 4,997 European ancestry male individuals |
Replication sample | NA |
Region | 13q21.1 |
Chromosome id | chr13 |
Chromosome position | 58554392 |
Reported gene | PCDH17 |
Mapped gene | CTAGE16P - LOC105370218 |
Upstream gene id | 341689 |
Downstream gene id | 105370218 |
SNP gene ids | |
Upstream gene distance | 23247 |
Downstream gene distance | 73402 |
SNP risk allele | rs4886088-A |
SNPs | rs4886088 |
Merged | 0 |
SNP id current | 4886088 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.8 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | (men) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | subcutaneous adipose tissue measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004766 |
Study accession | GCST001521 |