SNP Detail For rs4886088
1.Mapping Information
Human SNP ID rs4886088
Human chromosome chr13
Human SNP position 58554392
Pig chromosome chr11
Pig SNP position 32971915
2.Annotation Information
PubMed ID22589738
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22589738
StudyGenome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
Disease/TraitSubcutaneous adipose tissue
Initial sample5,560 European ancestry female individuals, 4,997 European ancestry male individuals
Replication sampleNA
Region13q21.1
Chromosome idchr13
Chromosome position58554392
Reported genePCDH17
Mapped geneCTAGE16P - LOC105370218
Upstream gene id341689
Downstream gene id105370218
SNP gene ids
Upstream gene distance23247
Downstream gene distance73402
SNP risk allelers4886088-A
SNPsrs4886088
Merged0
SNP id current4886088
Contextintergenic_variant
Intergenic1
Allele frequency0.8
P value0.000008
Pvalue mlog5.09691001300805
P value text(men)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitsubcutaneous adipose tissue measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004766
Study accessionGCST001521