SNP Detail For rs4875320
1.Mapping Information
Human SNP ID rs4875320
Human chromosome chr8
Human SNP position 4306491
Pig chromosome chr15
Pig SNP position 40612441
2.Annotation Information
PubMed ID21347282
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21347282
StudyGenome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.
Disease/TraitHDL cholesterol
Initial sample7,813 African American individuals
Replication sample4,323 African American and Afro-Caribbean individuals
Region8p23.2
Chromosome idchr8
Chromosome position4306491
Reported geneCSMD1
Mapped geneCSMD1
Upstream gene id
Downstream gene id
SNP gene ids64478
Upstream gene distance
Downstream gene distance
SNP risk allelers4875320-A
SNPsrs4875320
Merged0
SNP id current4875320
Contextintron_variant
Intergenic0
Allele frequency0.82
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta0.0999
%95 Ci[0.057-0.143] unit decrease
PlatformAffymetrix [~ 2740000] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST000974