Human SNP ID | rs4875320 |
---|---|
Human chromosome | chr8 |
Human SNP position | 4306491 |
Pig chromosome | chr15 |
Pig SNP position | 40612441 |
PubMed ID | 21347282 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21347282 |
Study | Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project. |
Disease/Trait | HDL cholesterol |
Initial sample | 7,813 African American individuals |
Replication sample | 4,323 African American and Afro-Caribbean individuals |
Region | 8p23.2 |
Chromosome id | chr8 |
Chromosome position | 4306491 |
Reported gene | CSMD1 |
Mapped gene | CSMD1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 64478 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4875320-A |
SNPs | rs4875320 |
Merged | 0 |
SNP id current | 4875320 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.82 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 0.0999 |
%95 Ci | [0.057-0.143] unit decrease |
Platform | Affymetrix [~ 2740000] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST000974 |