SNP Detail For rs4871297
1.Mapping Information
Human SNP ID rs4871297
Human chromosome chr8
Human SNP position 122693916
Pig chromosome chr4
Pig SNP position 17424343
2.Annotation Information
PubMed ID23028342
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23028342
StudyNew susceptibility loci associated with kidney disease in type 1 diabetes.
Disease/TraitType 1 diabetes nephropathy
Initial sampleUp to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy
Replication sampleUp to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy
Region8q24.13
Chromosome idchr8
Chromosome position122693916
Reported geneRP11-973F15.1
Mapped geneLINC01151
Upstream gene id
Downstream gene id
SNP gene ids104266958
Upstream gene distance
Downstream gene distance
SNP risk allelers4871297-A
SNPsrs4871297
Merged0
SNP id current4871297
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.52
P value0.000002
Pvalue mlog5.69897000433601
P value text(ESRD)
Or beta1.23
%95 Ci[1.14-1.35]
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traittype 1 diabetes nephropathy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004996
Study accessionGCST001688