SNP Detail For rs4870044
1.Mapping Information
Human SNP ID rs4870044
Human chromosome chr6
Human SNP position 151580274
Pig chromosome chr1
Pig SNP position 17100300
2.Annotation Information
PubMed ID18445777
JournalN Engl J Med
Linkwww.ncbi.nlm.nih.gov/pubmed/18445777
StudyMultiple genetic loci for bone mineral density and fractures.
Disease/TraitBone mineral density (spine)
Initial sample5,861 European ancestry individuals
Replication sample7,925 European ancestry individuals
Region6q25.1
Chromosome idchr6
Chromosome position151580274
Reported geneESR1
Mapped geneCCDC170
Upstream gene id
Downstream gene id
SNP gene ids80129
Upstream gene distance
Downstream gene distance
SNP risk allelers4870044-T
SNPsrs4870044
Merged0
SNP id current4870044
Contextintron_variant
Intergenic0
Allele frequency0.28
P value0.00000000002
Pvalue mlog10.698970004336
P value text
Or beta0.11
%95 Ci[0.08-0.14] s.d. decrease
PlatformIllumina [301019]
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST000180
PubMed ID18445777
JournalN Engl J Med
Linkwww.ncbi.nlm.nih.gov/pubmed/18445777
StudyMultiple genetic loci for bone mineral density and fractures.
Disease/TraitBone mineral density (hip)
Initial sample5,861 European ancestry individuals
Replication sample7,925 European ancestry individuals
Region6q25.1
Chromosome idchr6
Chromosome position151580274
Reported geneESR1, C6orf97
Mapped geneCCDC170
Upstream gene id
Downstream gene id
SNP gene ids80129
Upstream gene distance
Downstream gene distance
SNP risk allelers4870044-T
SNPsrs4870044
Merged0
SNP id current4870044
Contextintron_variant
Intergenic0
Allele frequency0.28
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta0.08
%95 Ci[0.05-0.11] s.d. decrease
PlatformIllumina [301019]
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST000181