Human SNP ID | rs4870044 |
---|---|
Human chromosome | chr6 |
Human SNP position | 151580274 |
Pig chromosome | chr1 |
Pig SNP position | 17100300 |
PubMed ID | 18445777 |
---|---|
Journal | N Engl J Med |
Link | www.ncbi.nlm.nih.gov/pubmed/18445777 |
Study | Multiple genetic loci for bone mineral density and fractures. |
Disease/Trait | Bone mineral density (spine) |
Initial sample | 5,861 European ancestry individuals |
Replication sample | 7,925 European ancestry individuals |
Region | 6q25.1 |
Chromosome id | chr6 |
Chromosome position | 151580274 |
Reported gene | ESR1 |
Mapped gene | CCDC170 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 80129 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4870044-T |
SNPs | rs4870044 |
Merged | 0 |
SNP id current | 4870044 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.28 |
P value | 0.00000000002 |
Pvalue mlog | 10.698970004336 |
P value text | |
Or beta | 0.11 |
%95 Ci | [0.08-0.14] s.d. decrease |
Platform | Illumina [301019] |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST000180 |
PubMed ID | 18445777 |
Journal | N Engl J Med |
Link | www.ncbi.nlm.nih.gov/pubmed/18445777 |
Study | Multiple genetic loci for bone mineral density and fractures. |
Disease/Trait | Bone mineral density (hip) |
Initial sample | 5,861 European ancestry individuals |
Replication sample | 7,925 European ancestry individuals |
Region | 6q25.1 |
Chromosome id | chr6 |
Chromosome position | 151580274 |
Reported gene | ESR1, C6orf97 |
Mapped gene | CCDC170 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 80129 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4870044-T |
SNPs | rs4870044 |
Merged | 0 |
SNP id current | 4870044 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.28 |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | 0.08 |
%95 Ci | [0.05-0.11] s.d. decrease |
Platform | Illumina [301019] |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST000181 |