Human SNP ID | rs4869742 |
---|---|
Human chromosome | chr6 |
Human SNP position | 151586613 |
Pig chromosome | chr1 |
Pig SNP position | 17096595 |
PubMed ID | 21540461 |
---|---|
Journal | Blood |
Link | www.ncbi.nlm.nih.gov/pubmed/21540461 |
Study | A genome-wide association study identifies novel loci associated with susceptibility to chronic myeloid leukemia. |
Disease/Trait | Chronic myeloid leukemia |
Initial sample | 201 Korean ancestry cases, 497 Korean ancestry controls |
Replication sample | 237 Korean ancestry cases, 1,000 Korean ancestry controls, 232 European ancestry cases, 576 European ancestry controls |
Region | 6q25.1 |
Chromosome id | chr6 |
Chromosome position | 151586613 |
Reported gene | AKAP12, ZBTB2, MTHFD1L, RMND1, C6orf211, ESR1, C6orf97 |
Mapped gene | CCDC170 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 80129 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4869742-T |
SNPs | rs4869742 |
Merged | 0 |
SNP id current | 4869742 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.77 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.67 |
%95 Ci | [1.35-2.04] |
Platform | Affymetrix [456522] |
CNV | N |
Mapped trait | chronic myelogenous leukemia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000339 |
Study accession | GCST001063 |
PubMed ID | 22504420 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22504420 |
Study | Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture. |
Disease/Trait | Bone mineral density |
Initial sample | Up to 32,961 European and East Asian ancestry individuals |
Replication sample | Up to 50,933 European and East Asian ancestry individuals |
Region | 6q25.1 |
Chromosome id | chr6 |
Chromosome position | 151586613 |
Reported gene | C6orf97 |
Mapped gene | CCDC170 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 80129 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4869742-T |
SNPs | rs4869742 |
Merged | 0 |
SNP id current | 4869742 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.31 |
P value | 4E-35 |
Pvalue mlog | 34.397940008672 |
P value text | (LSBMD) |
Or beta | 0.08 |
%95 Ci | [NR] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST001482 |