SNP Detail For rs4869266
1.Mapping Information
Human SNP ID rs4869266
Human chromosome chr5
Human SNP position 96151236
Pig chromosome chr2
Pig SNP position 106670636
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region5q15
Chromosome idchr5
Chromosome position96151236
Reported geneNR
Mapped geneLOC105379095, LOC101929710
Upstream gene id
Downstream gene id
SNP gene ids105379095, 101929710
Upstream gene distance
Downstream gene distance
SNP risk allelers4869266-G
SNPsrs4869266
Merged0
SNP id current4869266
Contextintron_variant
Intergenic0
Allele frequency0.664911823953174
P value0.000003
Pvalue mlog5.52287874528033
P value text(IGP16)
Or beta0.1519
%95 Ci[0.088-0.216] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848