Human SNP ID | rs4868304 |
---|---|
Human chromosome | chr5 |
Human SNP position | 173704454 |
Pig chromosome | chr16 |
Pig SNP position | 55070050 |
PubMed ID | 25866641 |
---|---|
Journal | Biomark Res |
Link | www.ncbi.nlm.nih.gov/pubmed/25866641 |
Study | A genome wide association study on Newfoundland colorectal cancer patients__ survival outcomes. |
Disease/Trait | Survival in rectal cancer |
Initial sample | 171 European ancestry cases |
Replication sample | NA |
Region | 5q35.2 |
Chromosome id | chr5 |
Chromosome position | 173704454 |
Reported gene | intergenic |
Mapped gene | LOC105377736 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105377736 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4868304-? |
SNPs | rs4868304 |
Merged | 0 |
SNP id current | 4868304 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | (disease-free survival) |
Or beta | 2.91 |
%95 Ci | [1.94-4.37] |
Platform | Illumina [729737] |
CNV | N |
Mapped trait | disease free survival, rectum cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000409, http://www.ebi.ac.uk/efo/EFO_1000657 |
Study accession | GCST002821 |