SNP Detail For rs4868304
1.Mapping Information
Human SNP ID rs4868304
Human chromosome chr5
Human SNP position 173704454
Pig chromosome chr16
Pig SNP position 55070050
2.Annotation Information
PubMed ID25866641
JournalBiomark Res
Linkwww.ncbi.nlm.nih.gov/pubmed/25866641
StudyA genome wide association study on Newfoundland colorectal cancer patients__ survival outcomes.
Disease/TraitSurvival in rectal cancer
Initial sample171 European ancestry cases
Replication sampleNA
Region5q35.2
Chromosome idchr5
Chromosome position173704454
Reported geneintergenic
Mapped geneLOC105377736
Upstream gene id
Downstream gene id
SNP gene ids105377736
Upstream gene distance
Downstream gene distance
SNP risk allelers4868304-?
SNPsrs4868304
Merged0
SNP id current4868304
Contextintron_variant
Intergenic0
Allele frequency
P value0.0000003
Pvalue mlog6.52287874528033
P value text(disease-free survival)
Or beta2.91
%95 Ci[1.94-4.37]
PlatformIllumina [729737]
CNVN
Mapped traitdisease free survival, rectum cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000409, http://www.ebi.ac.uk/efo/EFO_1000657
Study accessionGCST002821