Human SNP ID | rs4865673 |
---|---|
Human chromosome | chr5 |
Human SNP position | 51632976 |
Pig chromosome | chr16 |
Pig SNP position | 32847630 |
PubMed ID | 23259602 |
---|---|
Journal | BMC Oral Health |
Link | www.ncbi.nlm.nih.gov/pubmed/23259602 |
Study | Genome-wide association scan of dental caries in the permanent dentition. |
Disease/Trait | Dental caries |
Initial sample | 1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals |
Replication sample | NA |
Region | 5q11.2 |
Chromosome id | chr5 |
Chromosome position | 51632976 |
Reported gene | ISL1 |
Mapped gene | LOC105379196 - LOC105378959 |
Upstream gene id | 105379196 |
Downstream gene id | 105378959 |
SNP gene ids | |
Upstream gene distance | 187852 |
Downstream gene distance | 304715 |
SNP risk allele | rs4865673-? |
SNPs | rs4865673 |
Merged | 0 |
SNP id current | 4865673 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | (Comparatively Younger) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [~ 1400000] (imputed) |
CNV | N |
Mapped trait | dental caries |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003819 |
Study accession | GCST001786 |