SNP Detail For rs4865673
1.Mapping Information
Human SNP ID rs4865673
Human chromosome chr5
Human SNP position 51632976
Pig chromosome chr16
Pig SNP position 32847630
2.Annotation Information
PubMed ID23259602
JournalBMC Oral Health
Linkwww.ncbi.nlm.nih.gov/pubmed/23259602
StudyGenome-wide association scan of dental caries in the permanent dentition.
Disease/TraitDental caries
Initial sample1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals
Replication sampleNA
Region5q11.2
Chromosome idchr5
Chromosome position51632976
Reported geneISL1
Mapped geneLOC105379196 - LOC105378959
Upstream gene id105379196
Downstream gene id105378959
SNP gene ids
Upstream gene distance187852
Downstream gene distance304715
SNP risk allelers4865673-?
SNPsrs4865673
Merged0
SNP id current4865673
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000009
Pvalue mlog5.04575749056067
P value text(Comparatively Younger)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 1400000] (imputed)
CNVN
Mapped traitdental caries
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003819
Study accessionGCST001786