Human SNP ID | rs4853036 |
---|---|
Human chromosome | chr2 |
Human SNP position | 69832692 |
Pig chromosome | chr3 |
Pig SNP position | 76055094 |
PubMed ID | 26621817 |
---|---|
Journal | Sci Rep |
Link | www.ncbi.nlm.nih.gov/pubmed/26621817 |
Study | Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1. |
Disease/Trait | Colorectal or endometrial cancer |
Initial sample | 5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls |
Replication sample | 4,330 European ancestry endometrial carcinoma cases, 26,849 European ancestry controls |
Region | 2p13.3 |
Chromosome id | chr2 |
Chromosome position | 69832692 |
Reported gene | GMCL1 |
Mapped gene | GMCL1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 64395 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4853036-? |
SNPs | rs4853036 |
Merged | 0 |
SNP id current | 4853036 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.264 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | (same direction) |
Or beta | 1.0869565 |
%95 Ci | [1.05-1.12] |
Platform | Illumina [up to 6000000] (imputed) |
CNV | N |
Mapped trait | colorectal cancer, endometrial neoplasm |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842, http://www.ebi.ac.uk/efo/EFO_0004230 |
Study accession | GCST003208 |