SNP Detail For rs4853036
1.Mapping Information
Human SNP ID rs4853036
Human chromosome chr2
Human SNP position 69832692
Pig chromosome chr3
Pig SNP position 76055094
2.Annotation Information
PubMed ID26621817
JournalSci Rep
Linkwww.ncbi.nlm.nih.gov/pubmed/26621817
StudyMeta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.
Disease/TraitColorectal or endometrial cancer
Initial sample5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls
Replication sample4,330 European ancestry endometrial carcinoma cases, 26,849 European ancestry controls
Region2p13.3
Chromosome idchr2
Chromosome position69832692
Reported geneGMCL1
Mapped geneGMCL1
Upstream gene id
Downstream gene id
SNP gene ids64395
Upstream gene distance
Downstream gene distance
SNP risk allelers4853036-?
SNPsrs4853036
Merged0
SNP id current4853036
Contextintron_variant
Intergenic0
Allele frequency0.264
P value0.000006
Pvalue mlog5.22184874961635
P value text(same direction)
Or beta1.0869565
%95 Ci[1.05-1.12]
PlatformIllumina [up to 6000000] (imputed)
CNVN
Mapped traitcolorectal cancer, endometrial neoplasm
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842, http://www.ebi.ac.uk/efo/EFO_0004230
Study accessionGCST003208