SNP Detail For rs4849965
1.Mapping Information
Human SNP ID rs4849965
Human chromosome chr2
Human SNP position 4561337
Pig chromosome chr3
Pig SNP position 139709843
2.Annotation Information
PubMed ID26305897
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26305897
StudyGenome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).
Disease/TraitDiabetic kidney disease
Initial sample1,564 African American cases, 369 African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry dia
Replication sample950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 Eu
Region2p25.2
Chromosome idchr2
Chromosome position4561337
Reported geneSOX11
Mapped geneNPM1P48 - LINC01249
Upstream gene id442006
Downstream gene id727982
SNP gene ids
Upstream gene distance46185
Downstream gene distance66881
SNP risk allelers4849965-C
SNPsrs4849965
Merged
SNP id current4849965
Contextintergenic_variant
Intergenic1
Allele frequency0.28
P value0.000006
Pvalue mlog5.22184874961635
P value text(Mexican, additive )
Or beta1.5
%95 Ci[1.26-1.79]
PlatformAffymetrix [NR]
CNVN
Mapped traitdiabetic nephropathy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000401
Study accessionGCST003098