Human SNP ID | rs484959 |
---|---|
Human chromosome | chr1 |
Human SNP position | 109823461 |
Pig chromosome | chr4 |
Pig SNP position | 120901254 |
PubMed ID | 20436471 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20436471 |
Study | Genome-wide association study identifies variants at CSF1, OPTN and TNFRSF11A as genetic risk factors for Paget__s disease of bone. |
Disease/Trait | Paget__s disease |
Initial sample | 692 European ancestry cases, 1,001 European ancestry controls |
Replication sample | 256 European ancestry cases, 488 European ancestry controls |
Region | 1p13.3 |
Chromosome id | chr1 |
Chromosome position | 109823461 |
Reported gene | CSF1 |
Mapped gene | EPS8L3 - CSF1 |
Upstream gene id | 79574 |
Downstream gene id | 1435 |
SNP gene ids | |
Upstream gene distance | 59439 |
Downstream gene distance | 87150 |
SNP risk allele | rs484959-? |
SNPs | rs484959 |
Merged | 0 |
SNP id current | 484959 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.51 |
P value | 5E-24 |
Pvalue mlog | 23.3010299956639 |
P value text | |
Or beta | 1.82 |
%95 Ci | [1.61-2.04] |
Platform | Illumina [294663] |
CNV | N |
Mapped trait | osteitis deformans |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004261 |
Study accession | GCST000672 |