Human SNP ID | rs4849121 |
---|---|
Human chromosome | chr2 |
Human SNP position | 110842129 |
Pig chromosome | chr3 |
Pig SNP position | 47413885 |
PubMed ID | 22197929 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22197929 |
Study | A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy. |
Disease/Trait | IgA nephropathy |
Initial sample | 1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls |
Replication sample | 2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls |
Region | 2q13 |
Chromosome id | chr2 |
Chromosome position | 110842129 |
Reported gene | ACOXL |
Mapped gene | ACOXL |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 55289 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4849121-G |
SNPs | rs4849121 |
Merged | 0 |
SNP id current | 4849121 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000004 |
Pvalue mlog | 6.39794000867203 |
P value text | |
Or beta | 1.15 |
%95 Ci | [1.09-1.22] |
Platform | Illumina [444882] |
CNV | N |
Mapped trait | IGA glomerulonephritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004194 |
Study accession | GCST001364 |