SNP Detail For rs4846923
1.Mapping Information
Human SNP ID rs4846923
Human chromosome chr1
Human SNP position 230171476
Pig chromosome chr14
Pig SNP position 64866069
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitHDL cholesterol
Initial sampleup to 62,166 European ancestry individuals
Replication sampleNA
Region1q42.13
Chromosome idchr1
Chromosome position230171476
Reported geneGALNT2
Mapped geneGALNT2
Upstream gene id
Downstream gene id
SNP gene ids2590
Upstream gene distance
Downstream gene distance
SNP risk allelers4846923-G
SNPsrs4846923
Merged
SNP id current4846923
Contextintron_variant
Intergenic0
Allele frequency0.71
P value0.0000000000000001
Pvalue mlog16
P value text
Or beta0.055
%95 Ci[0.041-0.069] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST002899