Human SNP ID | rs4846922 |
---|---|
Human chromosome | chr1 |
Human SNP position | 230171436 |
Pig chromosome | chr14 |
Pig SNP position | 64866113 |
PubMed ID | 22399527 |
---|---|
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22399527 |
Study | Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits. |
Disease/Trait | Metabolic syndrome |
Initial sample | 2,637 European ancestry cases, 7,927 European ancestry controls |
Replication sample | NA |
Region | 1q42.13 |
Chromosome id | chr1 |
Chromosome position | 230171436 |
Reported gene | GALNT2 |
Mapped gene | GALNT2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 2590 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4846922-T |
SNPs | rs4846922 |
Merged | 0 |
SNP id current | 4846922 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.39 |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | (HDL) |
Or beta | 0.08 |
%95 Ci | [NR] mmol/l decrease |
Platform | Illumina [1257079] (imputed) |
CNV | N |
Mapped trait | metabolic syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000195 |
Study accession | GCST001436 |