SNP Detail For rs4846922
1.Mapping Information
Human SNP ID rs4846922
Human chromosome chr1
Human SNP position 230171436
Pig chromosome chr14
Pig SNP position 64866113
2.Annotation Information
PubMed ID22399527
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22399527
StudyGenome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.
Disease/TraitMetabolic syndrome
Initial sample2,637 European ancestry cases, 7,927 European ancestry controls
Replication sampleNA
Region1q42.13
Chromosome idchr1
Chromosome position230171436
Reported geneGALNT2
Mapped geneGALNT2
Upstream gene id
Downstream gene id
SNP gene ids2590
Upstream gene distance
Downstream gene distance
SNP risk allelers4846922-T
SNPsrs4846922
Merged0
SNP id current4846922
Contextintron_variant
Intergenic0
Allele frequency0.39
P value0.00000004
Pvalue mlog7.39794000867203
P value text(HDL)
Or beta0.08
%95 Ci[NR] mmol/l decrease
PlatformIllumina [1257079] (imputed)
CNVN
Mapped traitmetabolic syndrome
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000195
Study accessionGCST001436