SNP Detail For rs4842838
1.Mapping Information
Human SNP ID rs4842838
Human chromosome chr15
Human SNP position 83913372
Pig chromosome chr7
Pig SNP position 56620908
2.Annotation Information
PubMed ID19343178
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19343178
StudyMeta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.
Disease/TraitHeight
Initial sample12,611 European ancestry individuals
Replication sample7,187 European ancestry individuals
Region15q25.2
Chromosome idchr15
Chromosome position83913372
Reported geneADAMTSL3
Mapped geneADAMTSL3
Upstream gene id
Downstream gene id
SNP gene ids57188
Upstream gene distance
Downstream gene distance
SNP risk allelers4842838-?
SNPsrs4842838
Merged0
SNP id current4842838
Contextmissense_variant
Intergenic0
Allele frequency0.32
P value0.00000003
Pvalue mlog7.52287874528033
P value text
Or beta0.06
%95 Ci[0.04-0.07] s.d. decrease
PlatformIllumina [229216]
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000372
PubMed ID20189936
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20189936
StudyA genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.
Disease/TraitHeight
Initial sample19,633 Japanese ancestry individuals
Replication sampleNA
Region15q25.2
Chromosome idchr15
Chromosome position83913372
Reported geneADAMTSL3
Mapped geneADAMTSL3
Upstream gene id
Downstream gene id
SNP gene ids57188
Upstream gene distance
Downstream gene distance
SNP risk allelers4842838-G
SNPsrs4842838
Merged0
SNP id current4842838
Contextmissense_variant
Intergenic0
Allele frequency0.29
P value0.0000001
Pvalue mlog7
P value text
Or beta0.06
%95 Ci[0.04-0.08] cm decrease
PlatformIllumina [420885]
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000611