Human SNP ID | rs4842838 |
---|---|
Human chromosome | chr15 |
Human SNP position | 83913372 |
Pig chromosome | chr7 |
Pig SNP position | 56620908 |
PubMed ID | 19343178 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19343178 |
Study | Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size. |
Disease/Trait | Height |
Initial sample | 12,611 European ancestry individuals |
Replication sample | 7,187 European ancestry individuals |
Region | 15q25.2 |
Chromosome id | chr15 |
Chromosome position | 83913372 |
Reported gene | ADAMTSL3 |
Mapped gene | ADAMTSL3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 57188 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4842838-? |
SNPs | rs4842838 |
Merged | 0 |
SNP id current | 4842838 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.32 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | |
Or beta | 0.06 |
%95 Ci | [0.04-0.07] s.d. decrease |
Platform | Illumina [229216] |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST000372 |
PubMed ID | 20189936 |
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20189936 |
Study | A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci. |
Disease/Trait | Height |
Initial sample | 19,633 Japanese ancestry individuals |
Replication sample | NA |
Region | 15q25.2 |
Chromosome id | chr15 |
Chromosome position | 83913372 |
Reported gene | ADAMTSL3 |
Mapped gene | ADAMTSL3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 57188 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4842838-G |
SNPs | rs4842838 |
Merged | 0 |
SNP id current | 4842838 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.29 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | |
Or beta | 0.06 |
%95 Ci | [0.04-0.08] cm decrease |
Platform | Illumina [420885] |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST000611 |