SNP Detail For rs4839431
1.Mapping Information
Human SNP ID rs4839431
Human chromosome chr1
Human SNP position 110491187
Pig chromosome chr4
Pig SNP position 120017771
2.Annotation Information
PubMed ID22610502
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22610502
StudyGenome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.
Disease/TraitImmune reponse to smallpox (secreted IFN-alpha)
Initial sampleUp to 512 European ancestry individuals, up to 199 African American individuals
Replication sampleNA
Region1p13.3
Chromosome idchr1
Chromosome position110491187
Reported geneCYMP
Mapped geneCYMP
Upstream gene id
Downstream gene id
SNP gene ids643160
Upstream gene distance
Downstream gene distance
SNP risk allelers4839431-A
SNPsrs4839431
Merged0
SNP id current4839431
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency
P value0.0000002
Pvalue mlog6.69897000433601
P value text(AA)
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitresponse to vaccine, cytokine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004645, http://www.ebi.ac.uk/efo/EFO_0004873
Study accessionGCST001538