Human SNP ID | rs4839431 |
---|---|
Human chromosome | chr1 |
Human SNP position | 110491187 |
Pig chromosome | chr4 |
Pig SNP position | 120017771 |
PubMed ID | 22610502 |
---|---|
Journal | Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22610502 |
Study | Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients. |
Disease/Trait | Immune reponse to smallpox (secreted IFN-alpha) |
Initial sample | Up to 512 European ancestry individuals, up to 199 African American individuals |
Replication sample | NA |
Region | 1p13.3 |
Chromosome id | chr1 |
Chromosome position | 110491187 |
Reported gene | CYMP |
Mapped gene | CYMP |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 643160 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4839431-A |
SNPs | rs4839431 |
Merged | 0 |
SNP id current | 4839431 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | (AA) |
Or beta | |
%95 Ci | |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | response to vaccine, cytokine measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004645, http://www.ebi.ac.uk/efo/EFO_0004873 |
Study accession | GCST001538 |