Human SNP ID | rs483465 |
---|---|
Human chromosome | chr3 |
Human SNP position | 136329135 |
Pig chromosome | chr13 |
Pig SNP position | 84683553 |
PubMed ID | 25961943 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | HDL cholesterol |
Initial sample | up to 62,166 European ancestry individuals |
Replication sample | NA |
Region | 3q22.3 |
Chromosome id | chr3 |
Chromosome position | 136329135 |
Reported gene | MSL2L1 |
Mapped gene | PCCB |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5096 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs483465-A |
SNPs | rs483465 |
Merged | |
SNP id current | 483465 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.21 |
P value | 0.0000000004 |
Pvalue mlog | 9.39794000867203 |
P value text | |
Or beta | 0.045 |
%95 Ci | [0.031-0.059] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST002899 |