SNP Detail For rs483465
1.Mapping Information
Human SNP ID rs483465
Human chromosome chr3
Human SNP position 136329135
Pig chromosome chr13
Pig SNP position 84683553
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitHDL cholesterol
Initial sampleup to 62,166 European ancestry individuals
Replication sampleNA
Region3q22.3
Chromosome idchr3
Chromosome position136329135
Reported geneMSL2L1
Mapped genePCCB
Upstream gene id
Downstream gene id
SNP gene ids5096
Upstream gene distance
Downstream gene distance
SNP risk allelers483465-A
SNPsrs483465
Merged
SNP id current483465
Contextintron_variant
Intergenic0
Allele frequency0.21
P value0.0000000004
Pvalue mlog9.39794000867203
P value text
Or beta0.045
%95 Ci[0.031-0.059] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST002899