Human SNP ID | rs4820834 |
---|---|
Human chromosome | chr22 |
Human SNP position | 30355638 |
Pig chromosome | chr14 |
Pig SNP position | 50418412 |
PubMed ID | 23870195 |
---|---|
Journal | BMC Med Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23870195 |
Study | Genetics of coronary artery calcification among African Americans, a meta-analysis. |
Disease/Trait | Coronary artery calcification |
Initial sample | 5,823 African American individuals |
Replication sample | 9,992 European ancestry individuals |
Region | 22q12.2 |
Chromosome id | chr22 |
Chromosome position | 30355638 |
Reported gene | CCDC157 |
Mapped gene | SF3A1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10291 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4820834-A |
SNPs | rs4820834 |
Merged | 0 |
SNP id current | 4820834 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.02 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | (AA) |
Or beta | 0.71 |
%95 Ci | [0.4-1.02] unit decrease |
Platform | Affymetrix, Illumina [up to 2727966] (imputed) |
CNV | N |
Mapped trait | coronary artery calcification |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004723 |
Study accession | GCST002097 |