SNP Detail For rs4820834
1.Mapping Information
Human SNP ID rs4820834
Human chromosome chr22
Human SNP position 30355638
Pig chromosome chr14
Pig SNP position 50418412
2.Annotation Information
PubMed ID23870195
JournalBMC Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23870195
StudyGenetics of coronary artery calcification among African Americans, a meta-analysis.
Disease/TraitCoronary artery calcification
Initial sample5,823 African American individuals
Replication sample9,992 European ancestry individuals
Region22q12.2
Chromosome idchr22
Chromosome position30355638
Reported geneCCDC157
Mapped geneSF3A1
Upstream gene id
Downstream gene id
SNP gene ids10291
Upstream gene distance
Downstream gene distance
SNP risk allelers4820834-A
SNPsrs4820834
Merged0
SNP id current4820834
Contextintron_variant
Intergenic0
Allele frequency0.02
P value0.000009
Pvalue mlog5.04575749056067
P value text(AA)
Or beta0.71
%95 Ci[0.4-1.02] unit decrease
PlatformAffymetrix, Illumina [up to 2727966] (imputed)
CNVN
Mapped traitcoronary artery calcification
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004723
Study accessionGCST002097