Human SNP ID | rs4820539 |
---|---|
Human chromosome | chr22 |
Human SNP position | 23135783 |
Pig chromosome | chr14 |
Pig SNP position | 52603618 |
PubMed ID | 22504420 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22504420 |
Study | Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture. |
Disease/Trait | Bone mineral density |
Initial sample | Up to 32,961 European and East Asian ancestry individuals |
Replication sample | Up to 50,933 European and East Asian ancestry individuals |
Region | 22q11.23 |
Chromosome id | chr22 |
Chromosome position | 23135783 |
Reported gene | RTDR1 |
Mapped gene | RSPH14 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 27156 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4820539-A |
SNPs | rs4820539 |
Merged | 0 |
SNP id current | 4820539 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.42 |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | (FNBMD) |
Or beta | 0.03 |
%95 Ci | [NR] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST001482 |