SNP Detail For rs4820539
1.Mapping Information
Human SNP ID rs4820539
Human chromosome chr22
Human SNP position 23135783
Pig chromosome chr14
Pig SNP position 52603618
2.Annotation Information
PubMed ID22504420
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22504420
StudyGenome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.
Disease/TraitBone mineral density
Initial sampleUp to 32,961 European and East Asian ancestry individuals
Replication sampleUp to 50,933 European and East Asian ancestry individuals
Region22q11.23
Chromosome idchr22
Chromosome position23135783
Reported geneRTDR1
Mapped geneRSPH14
Upstream gene id
Downstream gene id
SNP gene ids27156
Upstream gene distance
Downstream gene distance
SNP risk allelers4820539-A
SNPsrs4820539
Merged0
SNP id current4820539
Contextintron_variant
Intergenic0
Allele frequency0.42
P value0.0000002
Pvalue mlog6.69897000433601
P value text(FNBMD)
Or beta0.03
%95 Ci[NR] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST001482