SNP Detail For rs4819388
1.Mapping Information
Human SNP ID rs4819388
Human chromosome chr21
Human SNP position 44227538
Pig chromosome chr13
Pig SNP position 216985114
2.Annotation Information
PubMed ID20190752
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20190752
StudyMultiple common variants for celiac disease influencing immune gene expression.
Disease/TraitCeliac disease
Initial sample4,533 European ancestry cases, 10,750 European ancestry controls
Replication sample4,918 European ancestry cases, 5,684 European ancestry controls
Region21q22.3
Chromosome idchr21
Chromosome position44227538
Reported geneICOSLG
Mapped geneICOSLG
Upstream gene id
Downstream gene id
SNP gene ids23308
Upstream gene distance
Downstream gene distance
SNP risk allelers4819388-?
SNPsrs4819388
Merged0
SNP id current4819388
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.72
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta1.14
%95 Ci[1.09-1.19]
PlatformIllumina [292387]
CNVN
Mapped traitceliac disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001060
Study accessionGCST000612