Human SNP ID | rs4813003 |
---|---|
Human chromosome | chr20 |
Human SNP position | 46134645 |
Pig chromosome | chr17 |
Pig SNP position | 53947443 |
PubMed ID | 22446962 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22446962 |
Study | A genome-wide association study identifies three new risk loci for Kawasaki disease. |
Disease/Trait | Kawasaki disease |
Initial sample | 428 Japanese ancestry cases, 3,379 Japanese ancestry controls |
Replication sample | 754 Japanese ancestry cases, 947 Japanese ancestry controls |
Region | 20q13.12 |
Chromosome id | chr20 |
Chromosome position | 46134645 |
Reported gene | CD40 |
Mapped gene | CD40 - CDH22 |
Upstream gene id | 958 |
Downstream gene id | 64405 |
SNP gene ids | |
Upstream gene distance | 4900 |
Downstream gene distance | 39088 |
SNP risk allele | rs4813003-C |
SNPs | rs4813003 |
Merged | 0 |
SNP id current | 4813003 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.67 |
P value | 0.00000005 |
Pvalue mlog | 7.30102999566398 |
P value text | |
Or beta | 1.41 |
%95 Ci | [1.20-1.66] |
Platform | Illumina [463793] |
CNV | N |
Mapped trait | mucocutaneous lymph node syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004246 |
Study accession | GCST001455 |