SNP Detail For rs4813003
1.Mapping Information
Human SNP ID rs4813003
Human chromosome chr20
Human SNP position 46134645
Pig chromosome chr17
Pig SNP position 53947443
2.Annotation Information
PubMed ID22446962
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22446962
StudyA genome-wide association study identifies three new risk loci for Kawasaki disease.
Disease/TraitKawasaki disease
Initial sample428 Japanese ancestry cases, 3,379 Japanese ancestry controls
Replication sample754 Japanese ancestry cases, 947 Japanese ancestry controls
Region20q13.12
Chromosome idchr20
Chromosome position46134645
Reported geneCD40
Mapped geneCD40 - CDH22
Upstream gene id958
Downstream gene id64405
SNP gene ids
Upstream gene distance4900
Downstream gene distance39088
SNP risk allelers4813003-C
SNPsrs4813003
Merged0
SNP id current4813003
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.67
P value0.00000005
Pvalue mlog7.30102999566398
P value text
Or beta1.41
%95 Ci[1.20-1.66]
PlatformIllumina [463793]
CNVN
Mapped traitmucocutaneous lymph node syndrome
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004246
Study accessionGCST001455