Human SNP ID | rs4812973 |
---|---|
Human chromosome | chr20 |
Human SNP position | 45878897 |
Pig chromosome | chr17 |
Pig SNP position | 53718956 |
PubMed ID | 26053186 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26053186 |
Study | Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer. |
Disease/Trait | 3-hydroxypropylmercapturic acid levels in smokers |
Initial sample | 362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals |
Replication sample | NA |
Region | 20q13.12 |
Chromosome id | chr20 |
Chromosome position | 45878897 |
Reported gene | NR |
Mapped gene | ZSWIM3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 140831 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4812973-? |
SNPs | rs4812973 |
Merged | |
SNP id current | 4812973 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | (Native Hawaiian) |
Or beta | 0.4476 |
%95 Ci | [NR] unit increase |
Platform | Illumina [up to 11892802] (imputed) |
CNV | N |
Mapped trait | smoking behavior, 3-hydroxypropylmercapturic acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014 |
Study accession | GCST002956 |