SNP Detail For rs4811340
1.Mapping Information
Human SNP ID rs4811340
Human chromosome chr20
Human SNP position 52393218
Pig chromosome chr17
Pig SNP position 60145535
2.Annotation Information
PubMed ID24586183
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24586183
StudyIdentification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.
Disease/TraitThyroid peroxidase antibody positivity
Initial sample1,769 European ancestry cases, 16,528 European ancestry controls
Replication sample922 European ancestry cases, 8,068 European ancestry controls
Region20q13.2
Chromosome idchr20
Chromosome position52393218
Reported geneNR
Mapped geneLOC105376986 - LOC105372667
Upstream gene id105376986
Downstream gene id105372667
SNP gene ids
Upstream gene distance35663
Downstream gene distance76023
SNP risk allelers4811340-G
SNPsrs4811340
Merged0
SNP id current4811340
Contextintron_variant
Intergenic1
Allele frequency
P value0.0000006
Pvalue mlog6.22184874961635
P value text
Or beta1.13
%95 Ci[1.07-1.20]
PlatformAffymetrix, Illumina [up to 3437411] (imputed)
CNVN
Mapped traitthyroid peroxidase antibody measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005666
Study accessionGCST002378