Human SNP ID | rs4811117 |
---|---|
Human chromosome | chr20 |
Human SNP position | 51054898 |
Pig chromosome | chr17 |
Pig SNP position | 58911663 |
PubMed ID | 23918034 |
---|---|
Journal | Clin Oral Investig |
Link | www.ncbi.nlm.nih.gov/pubmed/23918034 |
Study | Genome-wide association study (GWAS) for molar-incisor hypomineralization (MIH). |
Disease/Trait | Molar-incisor hypomineralization |
Initial sample | 88 European ancestry cases, 580 European ancestry controls |
Replication sample | NA |
Region | 20q13.13 |
Chromosome id | chr20 |
Chromosome position | 51054898 |
Reported gene | NFATC2, KCNG1 |
Mapped gene | KCNG1 - LOC105372661 |
Upstream gene id | 3755 |
Downstream gene id | 105372661 |
SNP gene ids | |
Upstream gene distance | 31722 |
Downstream gene distance | 62492 |
SNP risk allele | rs4811117-T |
SNPs | rs4811117 |
Merged | 0 |
SNP id current | 4811117 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.124 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 3.13 |
%95 Ci | [1.92-5.13] |
Platform | Affymetrix [2013491] (imputed) |
CNV | N |
Mapped trait | molar-incisor hypomineralization |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005321 |
Study accession | GCST002114 |