SNP Detail For rs4811117
1.Mapping Information
Human SNP ID rs4811117
Human chromosome chr20
Human SNP position 51054898
Pig chromosome chr17
Pig SNP position 58911663
2.Annotation Information
PubMed ID23918034
JournalClin Oral Investig
Linkwww.ncbi.nlm.nih.gov/pubmed/23918034
StudyGenome-wide association study (GWAS) for molar-incisor hypomineralization (MIH).
Disease/TraitMolar-incisor hypomineralization
Initial sample88 European ancestry cases, 580 European ancestry controls
Replication sampleNA
Region20q13.13
Chromosome idchr20
Chromosome position51054898
Reported geneNFATC2, KCNG1
Mapped geneKCNG1 - LOC105372661
Upstream gene id3755
Downstream gene id105372661
SNP gene ids
Upstream gene distance31722
Downstream gene distance62492
SNP risk allelers4811117-T
SNPsrs4811117
Merged0
SNP id current4811117
Contextintergenic_variant
Intergenic1
Allele frequency0.124
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta3.13
%95 Ci[1.92-5.13]
PlatformAffymetrix [2013491] (imputed)
CNVN
Mapped traitmolar-incisor hypomineralization
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005321
Study accessionGCST002114