SNP Detail For rs480745
1.Mapping Information
Human SNP ID rs480745
Human chromosome chr1
Human SNP position 82804287
Pig chromosome chr6
Pig SNP position 121181313
2.Annotation Information
PubMed ID25599974
JournalGenet Epidemiol
Linkwww.ncbi.nlm.nih.gov/pubmed/25599974
StudyA Genome-Wide Association Study of Early Spontaneous Preterm Delivery.
Disease/TraitSpontaneous preterm birth (preterm birth)
Initial sample916 pre-term birth neonates, 935 term birth neonates
Replication sample243 pre-term birth neonates, 149 term birth neonates
Region1p31.1
Chromosome idchr1
Chromosome position82804287
Reported geneLPHN2
Mapped geneLOC105378814 - LOC105378815
Upstream gene id105378814
Downstream gene id105378815
SNP gene ids
Upstream gene distance148009
Downstream gene distance9836
SNP risk allelers480745-?
SNPsrs480745
Merged0
SNP id current480745
Contextintergenic_variant
Intergenic1
Allele frequency0.91
P value0.0000007
Pvalue mlog6.15490195998574
P value text
Or beta1.75
%95 Ci[NR]
PlatformAffymetrix [797196]
CNVN
Mapped traitbirth measurement, spontaneous preterm birth
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006921, http://www.ebi.ac.uk/efo/EFO_0006917
Study accessionGCST002751