SNP Detail For rs4803750
1.Mapping Information
Human SNP ID rs4803750
Human chromosome chr19
Human SNP position 44744370
Pig chromosome chr6
Pig SNP position 47151977
2.Annotation Information
PubMed ID19936222
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19936222
StudyForty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.
Disease/TraitLipid metabolism phenotypes
Initial sampleUp to 17,296 European ancestry female individuals
Replication sampleUp to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls
Region19q13.32
Chromosome idchr19
Chromosome position44744370
Reported gene2-APOE, APOC1
Mapped geneLOC105372417
Upstream gene id
Downstream gene id
SNP gene ids105372417
Upstream gene distance
Downstream gene distance
SNP risk allelers4803750-?
SNPsrs4803750
Merged0
SNP id current4803750
Contextupstream_gene_variant
Intergenic0
Allele frequencyNR
P value3E-51
Pvalue mlog50.5228787452803
P value text(APOB.assay, whole)
Or beta8.495
%95 Ci[NR] unit decrease
PlatformIllumina [335603]
CNVN
Mapped traitlipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004529
Study accessionGCST000533
PubMed ID19936222
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19936222
StudyForty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.
Disease/TraitLipid metabolism phenotypes
Initial sampleUp to 17,296 European ancestry female individuals
Replication sampleUp to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls
Region19q13.32
Chromosome idchr19
Chromosome position44744370
Reported gene2-APOE, APOC1
Mapped geneLOC105372417
Upstream gene id
Downstream gene id
SNP gene ids105372417
Upstream gene distance
Downstream gene distance
SNP risk allelers4803750-?
SNPsrs4803750
Merged0
SNP id current4803750
Contextupstream_gene_variant
Intergenic0
Allele frequencyNR
P value1E-27
Pvalue mlog27
P value text(LDL-C.assay, fasting)
Or beta9.276
%95 Ci[NR] unit decrease
PlatformIllumina [335603]
CNVN
Mapped traitlipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004529
Study accessionGCST000533
PubMed ID19936222
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19936222
StudyForty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.
Disease/TraitLipid metabolism phenotypes
Initial sampleUp to 17,296 European ancestry female individuals
Replication sampleUp to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls
Region19q13.32
Chromosome idchr19
Chromosome position44744370
Reported gene2-APOE, APOC1
Mapped geneLOC105372417
Upstream gene id
Downstream gene id
SNP gene ids105372417
Upstream gene distance
Downstream gene distance
SNP risk allelers4803750-?
SNPsrs4803750
Merged0
SNP id current4803750
Contextupstream_gene_variant
Intergenic0
Allele frequencyNR
P value1E-37
Pvalue mlog37
P value text(LDL-C.assay, whole)
Or beta9.284
%95 Ci[NR] unit decrease
PlatformIllumina [335603]
CNVN
Mapped traitlipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004529
Study accessionGCST000533