Human SNP ID | rs4803750 |
---|---|
Human chromosome | chr19 |
Human SNP position | 44744370 |
Pig chromosome | chr6 |
Pig SNP position | 47151977 |
PubMed ID | 19936222 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19936222 |
Study | Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis. |
Disease/Trait | Lipid metabolism phenotypes |
Initial sample | Up to 17,296 European ancestry female individuals |
Replication sample | Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls |
Region | 19q13.32 |
Chromosome id | chr19 |
Chromosome position | 44744370 |
Reported gene | 2-APOE, APOC1 |
Mapped gene | LOC105372417 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105372417 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4803750-? |
SNPs | rs4803750 |
Merged | 0 |
SNP id current | 4803750 |
Context | upstream_gene_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 3E-51 |
Pvalue mlog | 50.5228787452803 |
P value text | (APOB.assay, whole) |
Or beta | 8.495 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [335603] |
CNV | N |
Mapped trait | lipid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004529 |
Study accession | GCST000533 |
PubMed ID | 19936222 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19936222 |
Study | Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis. |
Disease/Trait | Lipid metabolism phenotypes |
Initial sample | Up to 17,296 European ancestry female individuals |
Replication sample | Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls |
Region | 19q13.32 |
Chromosome id | chr19 |
Chromosome position | 44744370 |
Reported gene | 2-APOE, APOC1 |
Mapped gene | LOC105372417 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105372417 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4803750-? |
SNPs | rs4803750 |
Merged | 0 |
SNP id current | 4803750 |
Context | upstream_gene_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 1E-27 |
Pvalue mlog | 27 |
P value text | (LDL-C.assay, fasting) |
Or beta | 9.276 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [335603] |
CNV | N |
Mapped trait | lipid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004529 |
Study accession | GCST000533 |
PubMed ID | 19936222 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19936222 |
Study | Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis. |
Disease/Trait | Lipid metabolism phenotypes |
Initial sample | Up to 17,296 European ancestry female individuals |
Replication sample | Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls |
Region | 19q13.32 |
Chromosome id | chr19 |
Chromosome position | 44744370 |
Reported gene | 2-APOE, APOC1 |
Mapped gene | LOC105372417 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105372417 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4803750-? |
SNPs | rs4803750 |
Merged | 0 |
SNP id current | 4803750 |
Context | upstream_gene_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 1E-37 |
Pvalue mlog | 37 |
P value text | (LDL-C.assay, whole) |
Or beta | 9.284 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [335603] |
CNV | N |
Mapped trait | lipid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004529 |
Study accession | GCST000533 |