Human SNP ID | rs4801131 |
---|---|
Human chromosome | chr18 |
Human SNP position | 55085469 |
Pig chromosome | chr1 |
Pig SNP position | 114978919 |
PubMed ID | 23974872 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23974872 |
Study | Genome-wide association analysis identifies 13 new risk loci for schizophrenia. |
Disease/Trait | Schizophrenia |
Initial sample | 5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls |
Replication sample | 4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios |
Region | 18q21.2 |
Chromosome id | chr18 |
Chromosome position | 55085469 |
Reported gene | TCF4 |
Mapped gene | LOC105372125 - LOC101927229 |
Upstream gene id | 105372125 |
Downstream gene id | 101927229 |
SNP gene ids | |
Upstream gene distance | 106 |
Downstream gene distance | 20435 |
SNP risk allele | rs4801131-C |
SNPs | rs4801131 |
Merged | 0 |
SNP id current | 4801131 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.582 |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | |
Or beta | 1.08 |
%95 Ci | [1.05-1.11] |
Platform | Affymetrix, Illumina [9871789] |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST002149 |