SNP Detail For rs4801131
1.Mapping Information
Human SNP ID rs4801131
Human chromosome chr18
Human SNP position 55085469
Pig chromosome chr1
Pig SNP position 114978919
2.Annotation Information
PubMed ID23974872
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23974872
StudyGenome-wide association analysis identifies 13 new risk loci for schizophrenia.
Disease/TraitSchizophrenia
Initial sample5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls
Replication sample4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios
Region18q21.2
Chromosome idchr18
Chromosome position55085469
Reported geneTCF4
Mapped geneLOC105372125 - LOC101927229
Upstream gene id105372125
Downstream gene id101927229
SNP gene ids
Upstream gene distance106
Downstream gene distance20435
SNP risk allelers4801131-C
SNPsrs4801131
Merged0
SNP id current4801131
Contextintergenic_variant
Intergenic1
Allele frequency0.582
P value0.00000001
Pvalue mlog8
P value text
Or beta1.08
%95 Ci[1.05-1.11]
PlatformAffymetrix, Illumina [9871789]
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST002149