SNP Detail For rs4794665
1.Mapping Information
Human SNP ID rs4794665
Human chromosome chr17
Human SNP position 56772968
Pig chromosome chr12
Pig SNP position 33906433
2.Annotation Information
PubMed ID18391951
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18391951
StudyMany sequence variants affecting diversity of adult human height.
Disease/TraitHeight
Initial sample30,968 European ancestry individuals
Replication sample8,541 European ancestry individuals
Region17q22
Chromosome idchr17
Chromosome position56772968
Reported geneCOIL, RISK, NOG, DGKE, TRIM25
Mapped geneNOG - C17orf67
Upstream gene id9241
Downstream gene id339210
SNP gene ids
Upstream gene distance177378
Downstream gene distance18945
SNP risk allelers4794665-A
SNPsrs4794665
Merged0
SNP id current4794665
Contextintergenic_variant
Intergenic1
Allele frequency0.48
P value0.0000001
Pvalue mlog7
P value text
Or beta3.6
%95 Ci[2.23-4.97] % s.d. increase
PlatformAffymetrix, Illumina [up to 304226]
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000175
PubMed ID25429064
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25429064
StudyMeta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.
Disease/TraitHeight
Initial sample36,227 East Asian ancestry individuals
Replication sample57,699 East Asian ancestry individuals
Region17q22
Chromosome idchr17
Chromosome position56772968
Reported geneC17orf67
Mapped geneNOG - C17orf67
Upstream gene id9241
Downstream gene id339210
SNP gene ids
Upstream gene distance177378
Downstream gene distance18945
SNP risk allelers4794665-A
SNPsrs4794665
Merged0
SNP id current4794665
Contextintergenic_variant
Intergenic1
Allele frequency0.17
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta0.019
%95 Ci[0.0053-0.0327] unit increase
PlatformAffymetrix, Illumina [2704730] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST002702