Human SNP ID | rs4791774 |
---|---|
Human chromosome | chr17 |
Human SNP position | 9028802 |
Pig chromosome | chr12 |
Pig SNP position | 56829662 |
PubMed ID | 25775280 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25775280 |
Study | Genome-wide association study identifies a new susceptibility locus for cleft lip with or without a cleft palate. |
Disease/Trait | Nonsyndromic cleft lip with or without cleft palate |
Initial sample | 858 Chinese ancestry cases, 1,248 Chinese ancestry controls |
Replication sample | 1,663 Chinese ancestry cases, 1,874 Chinese ancestry controls |
Region | 17p13.1 |
Chromosome id | chr17 |
Chromosome position | 9028802 |
Reported gene | NTN1 |
Mapped gene | NTN1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 9423 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4791774-G |
SNPs | rs4791774 |
Merged | 0 |
SNP id current | 4791774 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 5E-19 |
Pvalue mlog | 18.3010299956639 |
P value text | |
Or beta | 1.56 |
%95 Ci | [1.42-1.72] |
Platform | Affymetrix [842556] |
CNV | N |
Mapped trait | cleft palate, cleft lip |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0000175, http://www.ebi.ac.uk/efo/EFO_0003959 |
Study accession | GCST002811 |