SNP Detail For rs4791774
1.Mapping Information
Human SNP ID rs4791774
Human chromosome chr17
Human SNP position 9028802
Pig chromosome chr12
Pig SNP position 56829662
2.Annotation Information
PubMed ID25775280
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25775280
StudyGenome-wide association study identifies a new susceptibility locus for cleft lip with or without a cleft palate.
Disease/TraitNonsyndromic cleft lip with or without cleft palate
Initial sample858 Chinese ancestry cases, 1,248 Chinese ancestry controls
Replication sample1,663 Chinese ancestry cases, 1,874 Chinese ancestry controls
Region17p13.1
Chromosome idchr17
Chromosome position9028802
Reported geneNTN1
Mapped geneNTN1
Upstream gene id
Downstream gene id
SNP gene ids9423
Upstream gene distance
Downstream gene distance
SNP risk allelers4791774-G
SNPsrs4791774
Merged0
SNP id current4791774
Contextintron_variant
Intergenic0
Allele frequencyNR
P value5E-19
Pvalue mlog18.3010299956639
P value text
Or beta1.56
%95 Ci[1.42-1.72]
PlatformAffymetrix [842556]
CNVN
Mapped traitcleft palate, cleft lip
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0000175, http://www.ebi.ac.uk/efo/EFO_0003959
Study accessionGCST002811